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Update CI and primary development workflow to Pixi#2244

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VeckoTheGecko merged 25 commits intoParcels-code:v4-devfrom
VeckoTheGecko:pixi-pixi-pixi
Sep 26, 2025
Merged

Update CI and primary development workflow to Pixi#2244
VeckoTheGecko merged 25 commits intoParcels-code:v4-devfrom
VeckoTheGecko:pixi-pixi-pixi

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@VeckoTheGecko VeckoTheGecko commented Sep 26, 2025 •
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Changes:

  • Splits up our dependencies into "features" used in pixi to compose environments
  • Use Pixi to install Parcels from source
  • Defines Pixi tasks for our development workflow
  • Updates all our CI to use Pixi
  • Updates naming of CI workflows to reflect the command you run locally
  • Remove unused dependencies
    • pymbolic
    • ffmpeg
    • psutil and psutil-types
  • Add taplo as TOML formatter

Fixes #2205

Draft for now to test CI (couldn't test locally)

Pending:

  • Update contributing guidelines (future PR)

@VeckoTheGecko VeckoTheGecko force-pushed the pixi-pixi-pixi branch 2 times, most recently from 35f0bd2 to 5a4eacb Compare September 26, 2025 11:43
@VeckoTheGecko
Remove pymbolic dependency
e7e5f4c
@VeckoTheGecko
Move Pixi items to pixi.toml
fa06398
@VeckoTheGecko
Section pixi.toml into features
e5f019d
@VeckoTheGecko
Remove ffmpeg and psutil dependencies
7fb1279
@VeckoTheGecko
Add pooch to pixi deps
ceef8b1
@VeckoTheGecko
Move task definitions to features
82bec4f
@VeckoTheGecko
Add toml formatter
8bba97e
@VeckoTheGecko
Add pixi py311 and py312 features
be98016
@VeckoTheGecko
Add environment definitions
143d705
@VeckoTheGecko
Add pixi badge
fe6b1bb
@VeckoTheGecko
Update RTD to use pixi
3d93585
@VeckoTheGecko
Migrate CI to use Pixi
92c6518 
Leveraging some of the work I did for xarray ;)
@VeckoTheGecko
Migrate coverage to use pytest-cov
d318e69
@VeckoTheGecko
Migrate integration tests to use pixi
2dad301
@VeckoTheGecko
Refactor Coverage report to job level constant
893b44d
@VeckoTheGecko
Update typechecking to use Pixi
b58949e
@VeckoTheGecko
Migrate parcels install to use pixi-build
70a433d
@VeckoTheGecko
Update command in CI to pixi run
60237c6
@VeckoTheGecko
Update linkcheck workflow to be pixi
664eac8
@VeckoTheGecko
Remove comments
ee0a5cc
@VeckoTheGecko
Update RTD config
c380311
@VeckoTheGecko
Update integration CI workflow
52ebea5
@VeckoTheGecko
Fix RTD
e28caa7
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VeckoTheGecko commented Sep 26, 2025

Looks like the RTD build is failing with the following error message

Missing configuration option At least one of the following configuration options is required: build.tools or build.commands.

which is quite strange since I pretty much following the docs exactly (docs, readthedocs/readthedocs.org#12155) . I'll post an issue in RTD to update their example and see what they say. Low priority

@VeckoTheGecko VeckoTheGecko mentioned this pull request Sep 26, 2025
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VeckoTheGecko commented Sep 26, 2025

image

erikvansebille
erikvansebille reviewed Sep 26, 2025
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@VeckoTheGecko @erikvansebille
Update pyproject.toml
8f08985 
Co-authored-by: Erik van Sebille <e.vansebille@uu.nl>
@VeckoTheGecko VeckoTheGecko merged commit 7926db8 into Parcels-code:v4-dev Sep 26, 2025
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@github-project-automation github-project-automation bot moved this from Backlog to Done in Parcels development Sep 26, 2025
@VeckoTheGecko VeckoTheGecko deleted the pixi-pixi-pixi branch September 26, 2025 12:07
@VeckoTheGecko VeckoTheGecko mentioned this pull request Sep 26, 2025
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@VeckoTheGecko VeckoTheGecko mentioned this pull request Oct 6, 2025
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Update primary development workflow to use Pixi

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